Holobionts References

Opening pages of Dr. Ronald Shimek’s feature article on holobionts—astonishing assemblages of organisms living in complex symbiotic relationships.

CORAL HOLOBIONTS
There is more to a colony of Acropora than meets the eye. Much more.

by Ronald L. Shimek
CORAL Magazine, Volume 14:4, July/August 2017
pp 46-61

REFERENCES
Ainsworth, T. et al. 2015. The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME J 9: 2261–74.

Bordenstein S.R. and K.R. Theis. 2015. Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. PLOS Biol 13 (8): e1002226, https://doi.org/10.1371/journal.pbio.1002226.

Just, T. 1959. The Ecological Approach to Germfree Life Studies. Ann New York Acad Sci 78 (1): 371–74.

Ritchie, K.B. 2006. Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322: 1–14.

Theis, K., et al. 2016. Getting the Hologenome Concept Right: An Eco-Evolutionary Framework for Hosts and Their Microbiomes. mSystems 1: e00028–16, doi:10.1128/mSystems.00028-16.

Ware, M. and M. Mabe. 2015. The STM report: An overview of scientific and scholarly journal publishing, http://www.stm-assoc.org/2015_02_20_STM_Report_2015.pdf.

Woese, C.R. 2004. A new biology for a new century. Microbiol Molec Biol Rev 68 (2): 173–86.

Ziegler, M., et al. 2017. Bacterial community dynamics are linked to patterns of coral heat tolerance. Nat Commun 8: 14213, doi:10.1038/ncomms14213.

Meyer-Abich, A. 1950. Beiträge zur Theorie der evolution der Organismen: Typensynthese durch Holobiose (Vol. 5), Brill Archive.

Robinson, R.C. 1962. Blue stain fungi in lodgepole pine (Pinus contorta Dougl. var. latifolia Engelm.) infested by the mountain pine beetle (Dendroctonus monticolae Hopk.). Can J Bot 40 (4): 609–14.

Accompanying article exploring the findings of scientists whose DNA analysis of a colony of stony coral found 4,800 distinct species clustered together.

REFERENCES
ANATOMY OF A HOLOBIONT
by Ronald L. Shimek
CORAL Magazine, Volume 14:4, July/August 2017
Pages 56-57

Baeza, J.A. 2011. Squat lobsters as symbionts and in chemo-autotrophic environments.

In Poore G.C.B., Ahyong S.T., and Taylor J., eds, The Biology of Squat Lobsters, 249–70, CSIRO Publishing, Melbourne.

Bordenstein S.R. and K.R. Theis. 2015. Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. PLoS Biol 13 (8): e1002226, https://doi.org/10.1371/journal.pbio.1002226.

Buhl-Mortensen, L.E.N.E. and P.B. Mortensen. 2004. Symbiosis in deep-water corals. Symbiosis 37 (1): 33–61.

Enochs, I.C. 2010. Motile cryptofauna of an Eastern Pacific coral reef: biodiversity and trophic contribution. Open Access Dissertations, 497, http://scholarlyrepository.miami.edu/oa_dissertations/497.

Glynn, P.W. 2013. Fine-scale interspecific interactions on coral reefs: functional roles of small and cryptic metazoans. Smithson Contrib Mar Sci 39: 229–48.

Molodtsova, T.N., T.A. Britayev, and D. Martin. 2016. Cnidarians and their polychaete symbionts. In: S. Goffredo and Z. Dubinsky (eds), The Cnidaria, Past, Present and Future, 387–413, Springer International Publishing.

Oliver, T.A. and S.R. Palumbi. 2009. Distributions of stress-resistant coral symbionts match environmental patterns at local but not regional scales. Mar Ecol Prog Ser 378: 93–103.

Reshef, L., et al. 2006. The coral probiotic hypothesis. Environ Microbiol 8 (12): 2068–73.

Ritchie, K.B. 2006. Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322: 1–14.

Rohwer, F., V. Seguritan, F. Azam, and N. Knowlton. 2002. Diversity and distribution of coral-associated bacteria. Mar Ecol Prog Ser 243: 1–10.

Rowley, S. 2008. A critical evaluation of the symbiotic association between tropical tube-dwelling polychaetes and their hermatypic coral hosts, with a focus on Spirobranchus giganteus (Pallas, 1766). Plymouth Stud Sci 1: 335–53,

www.researchgate.net/profile/Sonia_Rowley2/publication/271517584_A_critical_evaluation_of_the_symbiotic_association_between_tropical_tube-dwelling_Polychaetes_and_their_Hermatypic_coral_hosts_with_a_focus_on_Spirobranchus_giganteus_(Pallas_1766)/links/5584789a08ae7bc2f44839f7.pdf.

Seong, K.A., et al. 2006. Bacterivory by co-occurring red-tide algae, heterotrophic nanoflagellates, and ciliates. Mar Ecol Prog Ser 322: 85–97.

Schmidt-Roach, S., K.J. Miller, P. Lundgren, and N. Andreakis. 2014. With eyes wide open: A revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology and genetics. Zool J Linnean Soc 170 (1):1–33.

Schminke, H.K. 2007. Entomology for the copepodologist. J Plankton Res 29 (suppl 1): 149–62.

Woese, C.R. 2004. A new biology for a new century. Microbiol Molec Biol Rev 68 (2): 173–86.

Ziegler, M., et al. 2017. Bacterial community dynamics are linked to patterns of coral heat tolerance. Nat Commun 8, #14213, doi:10.1038/ncomms14213.

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